PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TCP
Protein Properties Length: 345aa    MW: 37855.4 Da    PI: 8.9495
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099310.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.29.6e-41822161120
             TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssas 83 
                     +a+kkdrhski T++g+RdRRvRls+ +a++fFdLq++LGfdk+skt++WLl+++k+aikel++             s ss+s+ce  ss     
  XP_011099310.1  82 QAVKKDRHSKIFTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAIKELVQKtqigasasasakSISSHSDCEVLSSAG--- 173
                     589**************************************************************666655544444333335552222222... PP

             TCP  84 nsssg............kaaksaakskksqksaasalnlakesrakara 120
                         +            +++++ a+++k  k+++  +nlakesrak + 
  XP_011099310.1 174 ----NgetfenanslgeDSKRKFANKNKGAKDHQ--QNLAKESRAKLND 216
                     ....022334445665422222224444444444..89******98654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-4084213IPR005333Transcription factor, TCP
PROSITE profilePS5136936.22385143IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MFSKNTYLLP QVSPSLHARA NSSVVDLNGR EILLHHHPDM FSGHYLAANA SVVEAAALYN  60
QDVGGINEDP VSAMANAFQR KQAVKKDRHS KIFTSQGPRD RRVRLSIGIA RKFFDLQEML  120
GFDKPSKTLD WLLTKSKTAI KELVQKTQIG ASASASAKSI SSHSDCEVLS SAGNGETFEN  180
ANSLGEDSKR KFANKNKGAK DHQQNLAKES RAKLNDARNT DSGLNPSIPV EYGNNQLEVF  240
QLSAGSSSNS VSCLRANGEI REPILHCPLS NEAANGDLIQ ESIVITRKSK NPSFFGFQQN  300
LIVSRDLSSN YTIPSANPTD NWDICSFTSQ SNLCAILDQH KFMNR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5268701e-159KM526870.1 Sesamum triphyllum TCP transcription factor (CYC2A) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099310.10.0PREDICTED: transcription factor CYCLOIDEA
SwissprotQ9SNW84e-79DICH_ANTMA; Transcription factor DICHOTOMA
TrEMBLA0A096ZGH31e-152A0A096ZGH3_9LAMI; TCP transcription factor (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-29TCP family protein